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Flexible, fast and accurate sequence alignment profiling on GPGPU with PaSWAS

Open access

Flexible, fast and accurate sequence alignment profiling on GPGPU with PaSWAS

Open access

Samenvatting

To obtain large-scale sequence alignments in a fast and flexible way is an important step in the analyses of next generation sequencing data. Applications based on the Smith-Waterman (SW) algorithm are often either not fast enough, limited to dedicated tasks or not sufficiently accurate due to statistical issues. Current SW implementations that run on graphics hardware do not report the alignment details necessary for further analysis.

OrganisatieHanze
Gepubliceerd inPLoS ONE Public Library of Science
Datum2015-04-01
TypeArtikel
TaalEngels

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